added new folder and ran tests
This commit is contained in:
+16
-17
@@ -1,21 +1,20 @@
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version: '3.7'
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services:
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# app:
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# image: visual_critical_discourse_analysis:dev
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# container_name: visual_critical_discourse_analysis
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# build:
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# context: .
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# dockerfile: Dockerfile
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# env_file:
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# - local.env
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# environment:
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# - ENV=DEV
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# ports:
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# - 8050:8050
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# networks:
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# - backend
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# depends_on:
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# - mongo
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app:
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image: visual_critical_discourse_analysis:dev
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container_name: visual_critical_discourse_analysis
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build:
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context: .
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dockerfile: ./web_ui/Dockerfile
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env_file:
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- local.env
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environment:
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- ENV=DEV
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ports:
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- 8050:8050
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networks:
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- backend
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depends_on:
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- mongo
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mongo:
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image: mongo:latest
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container_name: mongo
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@@ -1,11 +1,10 @@
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version: '3.7'
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services:
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app:
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image: visual_critical_discourse_analysis:dev
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container_name: visual_critical_discourse_analysis
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build:
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context: .
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dockerfile: Dockerfile
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dockerfile: ./web_ui/Dockerfile
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env_file:
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- server.env
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ports:
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@@ -0,0 +1,57 @@
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# build stage
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FROM python:3.12-slim-bookworm as BUILDER
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# set environment variables
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ENV PYTHONUNBUFFERED=1 \
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PYTHONDONTWRITEBYTECODE=1 \
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PIP_NO_CACHE_DIR=off \
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PIP_DISABLE_PIP_VERSION_CHECK=ON \
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PIP_DEFAULT_TIMEOUT=100 \
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DEBIAN_FRONTEND=noninteractive \
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POETRY_HOME=/etc/poetry \
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POETRY_VERSION=1.7.1 \
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POETRY_VIRTUALENVS_IN_PROJECT=1 \
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POETRY_VIRTUALENVS_CREATE=1 \
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POETRY_NO_INTERACTION=1 \
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POETRY_CACHE_DIR=/tmp/poetry_cache \
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APP_HOME=/home/app
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# update system
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RUN apt-get update \
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&& apt-get install -y --no-install-recommends \
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build-essential \
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curl \
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&& apt-get clean
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# install poetry
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RUN curl -sSL https://install.python-poetry.org | python3 -
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ENV PATH="${POETRY_HOME}/bin:$PATH"
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# install runtime dependencies
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WORKDIR ${APP_HOME}
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COPY poetry.lock pyproject.toml ./
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RUN --mount=type=cache,target=${POETRY_CACHE_DIR} poetry install --without model
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# final stage
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FROM python:3.12-slim-bookworm
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# copy virtualenv made by poetry
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ENV APP_HOME=/home/app \
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VIRTUAL_ENV=/home/app/.venv
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COPY --from=builder ${VIRTUAL_ENV} ${VIRTUAL_ENV}
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ENV PATH="${VIRTUAL_ENV}/bin:${PATH}"
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# create home directory and app user
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RUN mkdir -p /home/app && \
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addgroup --system app && \
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adduser --system --group app
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# add code while changing ownership
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WORKDIR $APP_HOME
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COPY --chown=app:app ./core ./core
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COPY --chown=app:app ./src ./src
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# change to the app user
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USER app
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ENTRYPOINT [ "gunicorn", "src.main:server", "-b", "0.0.0.0:8050" ]
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@@ -0,0 +1,3 @@
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from __future__ import annotations
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from .app import app
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@@ -0,0 +1,251 @@
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from __future__ import annotations
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import logging
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import os
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import dash_bootstrap_components as dbc
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from dash import ALL
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from dash import Dash
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from dash import Input
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from dash import Output
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from dash import State
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from dash_auth import BasicAuth
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from pydantic import ValidationError
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from .layout import app_layout
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from core.database import connect
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from core.database import count_documents
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from core.database import get_visual_communication
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from core.database import NoDocumentFoundException
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from core.database import upsert_annotation
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from core.database import upsert_visual_communication
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from core.database import VisualCommunication
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from core.dto import ModelData
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# setup app
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app = Dash(__name__, external_stylesheets=[dbc.themes.BOOTSTRAP])
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app.title = 'visual critical discourse analysis'.title()
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app.layout = app_layout
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server = app.server
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# setup authentication
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AUTH_DICT = {
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os.getenv('DASH_AUTH_USERNAME'): os.getenv('DASH_AUTH_PASSWORD'),
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}
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BasicAuth(app, AUTH_DICT)
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# connect to database
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collection, db, client = connect()
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# define callbacks
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@app.callback(
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Output('alert-element', 'is_open'),
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Output('alert-element', 'children'),
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Input('alert-message', 'data'),
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)
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def show_alert(
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msg: str | None,
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):
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if msg is None or msg == '':
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return False, ''
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logging.info(f'updated alert message: {msg}')
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return True, msg
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@app.callback(
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Output('success-element', 'is_open'),
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Output('success-element', 'children'),
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Input('success-message', 'data'),
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)
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def show_success(
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msg: str | None,
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):
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if msg is None or msg == '':
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return False, ''
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logging.info(f"updated success message: {msg}")
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return True, msg
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@app.callback(
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Output('progress-bar', 'value'),
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Output('progress-bar', 'max'),
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Output('progress-bar', 'label'),
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Input('next-button', 'n_clicks'),
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Input('upload-data', 'filename'),
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)
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def update_progress_bar(
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n_clicks: int,
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filename_list: list[str] | None,
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):
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logging.info('began updating progress bar')
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global collection
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# get values from database
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num_total = count_documents(
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collection=collection,
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only_with_annotation=False,
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)
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num_handled = count_documents(
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collection=collection,
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only_with_annotation=True,
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)
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limit = int(num_total/20)
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label_str = f"{num_handled}/{num_total}" if num_handled >= limit else ''
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return num_handled, num_total, label_str
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@app.callback(
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Output('success-message', 'data', allow_duplicate=True),
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Output('alert-message', 'data', allow_duplicate=True),
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Input('upload-data', 'contents'),
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State('upload-data', 'filename'),
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prevent_initial_call=True,
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)
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def upload_images(
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content_list: list[str] | None,
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filename_list: list[str] | None,
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):
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logging.info('began uploading images')
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global collection
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# stop early if possible
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if content_list is None or filename_list is None:
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logging.warning('content_list is None -> nothing to upload')
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return None, 'nothing selected to upload'.title()
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# build list of visual communication
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visual_communication_list = []
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for content, filename in zip(content_list, filename_list):
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try:
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image = VisualCommunication.decode_image(content)
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vis_com = VisualCommunication(
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name=filename,
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image=image,
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)
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except Exception as exc:
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logging.warning(
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(
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'failed creating VisualCommunication object '
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f"from file {filename}"
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),
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exc,
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)
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else:
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visual_communication_list.append(vis_com)
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# upsert documents
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success = upsert_visual_communication(
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collection=collection,
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visual_communication_list=visual_communication_list,
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)
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if success:
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logging.info(f"succesfully uploaded {len(filename_list)} images")
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return 'successfully uploaded images'.title(), None
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logging.warning('failed inserting images into database')
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return None, 'failed uploading images'.title()
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@app.callback(
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Output('alert-message', 'data', allow_duplicate=True),
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Output('vis-com-name', 'data'),
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Output('image-container', 'src'),
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Output({'type': 'annotation', 'index': ALL}, 'value'),
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Input('next-button', 'n_clicks'),
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State('vis-com-name', 'data'),
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State('image-container', 'src'),
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State({'type': 'annotation', 'index': ALL}, 'id'),
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State({'type': 'annotation', 'index': ALL}, 'value'),
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prevent_initial_call=True,
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)
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def cycle_visual_communication_data(
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n_clicks: int,
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vis_com_name: str,
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image_src: str,
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annotation_keys: list,
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annotation_values: list,
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):
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logging.info('began cycling visual communication data')
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global collection
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# prepare default response
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response = [
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'',
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vis_com_name,
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image_src,
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annotation_values,
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]
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# check if next-button clicked
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if n_clicks == 0:
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logging.info('stopping early: next-button has not yet been clicked')
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return response
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# check if visual communication name is set
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if len(vis_com_name) > 0:
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logging.info('saving annotations to database: %s', vis_com_name)
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try:
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# extract option keys
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annotation_keys = [
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elem['index']
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for elem in annotation_keys
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]
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# ensure all options are set
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logging.info(annotation_keys)
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for option, value in zip(annotation_keys, annotation_values):
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if value is None:
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raise ValueError(f"{option} is not set")
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# prepare data to save
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annotation_keys = [
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elem.replace(' ', '_')
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for elem
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in annotation_keys
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]
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annotation_values = [
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elem.replace(' ', '_').lower()
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for elem
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in annotation_values
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]
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annotation_map = {
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key: value
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for key, value
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in zip(annotation_keys, annotation_values)
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}
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# instantiate ModelOutputs object
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annotations = ModelData.from_annotations(**annotation_map)
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# save data to database
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upsert_annotation(
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collection=collection,
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vis_com_name=vis_com_name,
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annotations=annotations,
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)
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except (ValueError, ValidationError) as exc:
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msg = f"failed saving annotation: {exc}"
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logging.warning(msg)
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response[0] = msg
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return tuple(response)
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# get new visual communication
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logging.info('trying to get new visual communication')
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try:
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# get data
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vis_com = get_visual_communication(
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collection=collection,
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with_annotation=False,
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)
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# set variables
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vis_com_name = vis_com.name
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image_src = vis_com.webencoded_image()
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if vis_com.prediction is not None:
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# TODO: update to use optional predictions
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pass
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else:
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# reset annotations
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annotation_values = [None for elem in annotation_values]
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except NoDocumentFoundException:
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msg = 'no unannotated data in database'
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logging.warning(msg)
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response[0] = msg
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return tuple(response)
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else:
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response[1] = vis_com_name
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response[2] = image_src
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response[3] = annotation_values
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logging.info('finished getting visual communication: %s', vis_com_name)
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return tuple(response)
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if __name__ == '__main__':
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app.run(debug=True)
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@@ -0,0 +1,3 @@
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from __future__ import annotations
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from .layout import app_layout
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@@ -0,0 +1,23 @@
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from __future__ import annotations
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import dash_bootstrap_components as dbc
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from dash import html
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alerts_element = html.Div(
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children=[
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dbc.Alert(
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children='',
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id='alert-element',
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dismissable=True,
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fade=False,
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is_open=False,
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),
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dbc.Alert(
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children='',
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id='success-element',
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is_open=False,
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duration=1000,
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),
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],
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)
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@@ -0,0 +1,20 @@
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from __future__ import annotations
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import dash_mantine_components as dmc
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from .image import image_element
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from .inputs import inputs_element
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body_element = dmc.Container(
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fluid=True,
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children=[
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dmc.Grid(
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grow=True,
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children=[
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dmc.Col([image_element], span=5),
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dmc.Col([inputs_element], span=7),
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],
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),
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],
|
||||
)
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@@ -0,0 +1,62 @@
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from __future__ import annotations
|
||||
|
||||
import dash_bootstrap_components as dbc
|
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import dash_mantine_components as dmc
|
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from dash import dcc
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from dash import html
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|
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title_element = dmc.Center(
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children=[
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html.H2(
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children=[
|
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'Visual Critical Discourse Analysis Tool',
|
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],
|
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),
|
||||
],
|
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)
|
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|
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progress_bar_element = dbc.Progress(
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id='progress-bar',
|
||||
max=100,
|
||||
value=0,
|
||||
color='lime',
|
||||
label='',
|
||||
style={
|
||||
'width': '400px',
|
||||
},
|
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)
|
||||
|
||||
upload_button_element = dcc.Upload(
|
||||
children=[
|
||||
dmc.Button(
|
||||
'upload images'.title(),
|
||||
id='upload-button',
|
||||
color='lime',
|
||||
n_clicks=0,
|
||||
variant='outline',
|
||||
radius='sm',
|
||||
size='md',
|
||||
),
|
||||
],
|
||||
multiple=True,
|
||||
id='upload-data',
|
||||
accept='image/png,image/jpeg,image/jpg',
|
||||
)
|
||||
|
||||
header_element = dmc.Header(
|
||||
height=80,
|
||||
children=[
|
||||
dmc.Group(
|
||||
children=[
|
||||
title_element,
|
||||
progress_bar_element,
|
||||
upload_button_element,
|
||||
],
|
||||
position='apart',
|
||||
style={
|
||||
'margin': '10px',
|
||||
'padding': '10px',
|
||||
},
|
||||
),
|
||||
],
|
||||
)
|
||||
@@ -0,0 +1,24 @@
|
||||
from __future__ import annotations
|
||||
|
||||
from base64 import b64encode
|
||||
from pathlib import Path
|
||||
|
||||
import dash_mantine_components as dmc
|
||||
from dash import html
|
||||
|
||||
# read init img
|
||||
init_img_path = Path(__file__).parent / 'init_img.png'
|
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with open(init_img_path.absolute(), 'rb') as fh:
|
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init_img_enc = b64encode(fh.read()).decode('utf-8')
|
||||
# generate init img string
|
||||
init_img_src = f"data:image/png;base64, {init_img_enc}"
|
||||
|
||||
image_element = dmc.Center(
|
||||
html.Img(
|
||||
style={
|
||||
'width': '100%',
|
||||
},
|
||||
id='image-container',
|
||||
src=init_img_src,
|
||||
),
|
||||
)
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 9.3 KiB |
@@ -0,0 +1,25 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import dash_mantine_components as dmc
|
||||
|
||||
from .labels import labels_element
|
||||
|
||||
next_button = dmc.Button(
|
||||
'next'.title(),
|
||||
id='next-button',
|
||||
n_clicks=0,
|
||||
fullWidth=True,
|
||||
color='lime',
|
||||
radius='sm',
|
||||
size='md',
|
||||
style={
|
||||
'height': '50px',
|
||||
},
|
||||
)
|
||||
|
||||
inputs_element = dmc.SimpleGrid(
|
||||
children=[
|
||||
labels_element,
|
||||
next_button,
|
||||
],
|
||||
)
|
||||
@@ -0,0 +1,113 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import dash_mantine_components as dmc
|
||||
from dash import dcc
|
||||
from dash import html
|
||||
|
||||
from core.dto import AngleData
|
||||
from core.dto import ContactData
|
||||
from core.dto import DistanceData
|
||||
from core.dto import FramingData
|
||||
from core.dto import InformationValueData
|
||||
from core.dto import ModalityColorData
|
||||
from core.dto import ModalityDepthData
|
||||
from core.dto import ModalityLightingData
|
||||
from core.dto import PointOfViewData
|
||||
from core.dto import SalienceData
|
||||
from core.dto import VisualSyntaxData
|
||||
|
||||
|
||||
def generate_visual_syntax_options_map():
|
||||
"""Generate map of titles and options for visual syntax labels."""
|
||||
options_map = {}
|
||||
# add experiential labels
|
||||
options_map['visual syntax'] = VisualSyntaxData.list_fields()
|
||||
return options_map
|
||||
|
||||
|
||||
def generate_interpersonal_options_map():
|
||||
"""Generate map of titles and options for interpersonal labels."""
|
||||
options_map = {}
|
||||
# add interpersonal labels
|
||||
options_map['contact'] = ContactData.list_fields()
|
||||
options_map['angle'] = AngleData.list_fields()
|
||||
options_map['point of view'] = PointOfViewData.list_fields()
|
||||
options_map['distance'] = DistanceData.list_fields()
|
||||
options_map['modality lighting'] = ModalityLightingData.list_fields()
|
||||
options_map['modality color'] = ModalityColorData.list_fields()
|
||||
options_map['modality depth'] = ModalityDepthData.list_fields()
|
||||
return options_map
|
||||
|
||||
|
||||
def generate_textual_options_map():
|
||||
"""Generate map of titles and options for textual labels."""
|
||||
options_map = {}
|
||||
# add textual labels
|
||||
options_map['information value'] = InformationValueData.list_fields()
|
||||
options_map['framing'] = FramingData.list_fields()
|
||||
options_map['salience'] = SalienceData.list_fields()
|
||||
return options_map
|
||||
|
||||
|
||||
# prepare experiential container
|
||||
experiential_map = generate_visual_syntax_options_map()
|
||||
experiential_container = dmc.Col(
|
||||
children=[
|
||||
html.H4('experiential'.title()),
|
||||
], span=5,
|
||||
)
|
||||
for title, options in experiential_map.items():
|
||||
id_dict = {'type': 'annotation', 'index': title.replace('_', '-')}
|
||||
experiential_container.children.append(
|
||||
dmc.Container([
|
||||
html.B(title.title()),
|
||||
dcc.RadioItems(
|
||||
options=[text.replace('_', ' ') for text in options],
|
||||
id=id_dict,
|
||||
),
|
||||
]),
|
||||
)
|
||||
# prepare interpersonal container
|
||||
interpersonal_map = generate_interpersonal_options_map()
|
||||
interpersonal_container = dmc.Col(
|
||||
children=[
|
||||
html.H4('interpersonal'.title()),
|
||||
], span=3,
|
||||
)
|
||||
for title, options in interpersonal_map.items():
|
||||
id_dict = {'type': 'annotation', 'index': title.replace('_', '-')}
|
||||
interpersonal_container.children.append(
|
||||
dmc.Container([
|
||||
html.B(title.title()),
|
||||
dcc.RadioItems(
|
||||
options=[text.replace('_', ' ') for text in options],
|
||||
id=id_dict,
|
||||
),
|
||||
]),
|
||||
)
|
||||
# prepare textual container
|
||||
textual_map = generate_textual_options_map()
|
||||
textual_container = dmc.Col(
|
||||
children=[
|
||||
html.H4('textual'.title()),
|
||||
], span=4,
|
||||
)
|
||||
for title, options in textual_map.items():
|
||||
id_dict = {'type': 'annotation', 'index': title.replace('_', '-')}
|
||||
textual_container.children.append(
|
||||
dmc.Container([
|
||||
html.B(title.title()),
|
||||
dcc.RadioItems(
|
||||
options=[text.replace('_', ' ') for text in options],
|
||||
id=id_dict,
|
||||
),
|
||||
]),
|
||||
)
|
||||
|
||||
labels_element = dmc.Grid(
|
||||
children=[
|
||||
experiential_container,
|
||||
interpersonal_container,
|
||||
textual_container,
|
||||
],
|
||||
)
|
||||
@@ -0,0 +1,36 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import dash_mantine_components as dmc
|
||||
|
||||
from .alerts import alerts_element
|
||||
from .body import body_element
|
||||
from .header import header_element
|
||||
from .stores import stores_element
|
||||
|
||||
|
||||
app_layout = dmc.MantineProvider(
|
||||
theme={
|
||||
'fontFamily': '"Inter", sans-serif',
|
||||
'components': {
|
||||
'NavLink': {
|
||||
'styles': {
|
||||
'label': {
|
||||
'color': '#c2c7d0',
|
||||
},
|
||||
},
|
||||
},
|
||||
},
|
||||
},
|
||||
children=[
|
||||
stores_element,
|
||||
alerts_element,
|
||||
dmc.Container(
|
||||
children=[
|
||||
header_element,
|
||||
body_element,
|
||||
],
|
||||
fluid=True,
|
||||
),
|
||||
|
||||
],
|
||||
)
|
||||
@@ -0,0 +1,13 @@
|
||||
from __future__ import annotations
|
||||
|
||||
from dash import dcc
|
||||
from dash import html
|
||||
|
||||
|
||||
stores_element = html.Div(
|
||||
children=[
|
||||
dcc.Store(id='alert-message', data=''),
|
||||
dcc.Store(id='success-message', data=''),
|
||||
dcc.Store(id='vis-com-name', data=''),
|
||||
],
|
||||
)
|
||||
@@ -0,0 +1,53 @@
|
||||
from __future__ import annotations
|
||||
|
||||
import logging
|
||||
import os
|
||||
from pathlib import Path
|
||||
|
||||
from app import app
|
||||
from dotenv import load_dotenv
|
||||
|
||||
# prepare optional local setup
|
||||
env_path = Path(__file__).parent.parent.parent / 'local.env'
|
||||
assert env_path.exists()
|
||||
load_dotenv(env_path)
|
||||
|
||||
# ensure env vars set
|
||||
necesasary_var_list = {
|
||||
'MONGO_HOST',
|
||||
'MONGO_DB',
|
||||
'MONGO_COLLECTION',
|
||||
'MONGO_USER',
|
||||
'MONGO_PASSWORD',
|
||||
'DASH_AUTH_USERNAME',
|
||||
'DASH_AUTH_PASSWORD',
|
||||
}
|
||||
for env_var in necesasary_var_list:
|
||||
# ensure env var set
|
||||
assert (
|
||||
env_var in os.environ
|
||||
), (
|
||||
f"environment variable not set: {env_var}"
|
||||
)
|
||||
|
||||
# setup logging stream handler
|
||||
FMT = (
|
||||
'%(asctime)s | '
|
||||
'%(levelname)s | '
|
||||
'%(filename)s | '
|
||||
'%(funcName)s | '
|
||||
'%(message)s'
|
||||
)
|
||||
DATEFMT = '%Y-%m-%d %H:%M:%S'
|
||||
logging.basicConfig(format=FMT, datefmt=DATEFMT, level=logging.INFO)
|
||||
|
||||
logging.info('initialized app')
|
||||
server = app.server
|
||||
server.config.update(SECRET_KEY=os.urandom(24))
|
||||
|
||||
if __name__ == '__main__':
|
||||
# prepare local env vars
|
||||
os.environ['MONGO_HOST'] = 'localhost'
|
||||
# run app
|
||||
app.run(debug=True)
|
||||
logging.info('started app')
|
||||
Reference in New Issue
Block a user